PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29827.m002538
Common NameLOC8284606, PALM1, RCOM_0864880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 232aa    MW: 25578.1 Da    PI: 6.5022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29827.m002538genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000117294123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  29827.m002538 72 YTCTFCRREFRSAQALGGHMNVH 94
                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-66999No hitNo description
PfamPF139121.7E-57295IPR007087Zinc finger, C2H2
SMARTSM003550.00667294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1577299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAAELGLLSL AQLELQKLAE SQQNQHQHQL NSSSSWMWNP KQTHEDEDSW EVRAFEEDTG  60
NIMGTTWPPR SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LHQTPPGSIN PNSSSTNSTS  120
ASTFIIPARE FSTNGGLCLL YQLPNPNGIF TTTAMNACAI DHSPSTLLSI SPYPHNYPVA  180
SPVVNSSHFY SSKAQPVAST DNSSNNCKDL GNEELDLELR LGHRSTSSSS PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136794229superman protein
2l1o_A2e-136794229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533390.0HM453339.1 Ricinus communis palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519824.11e-173PREDICTED: transcriptional regulator SUPERMAN
TrEMBLB9S1F91e-173B9S1F9_RICCO; Palmate-like pentafoliata 1 transcription factor
STRINGPOPTR_0003s09000.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-40C2H2 family protein